PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G369100.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 385aa    MW: 38959.5 Da    PI: 5.1583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G369100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-20148197255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Sobic.003G369100.3.p 148 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 197
                           7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.686148205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-33148206IPR001471AP2/ERF domain
PfamPF008471.3E-13148197IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22148206IPR016177DNA-binding domain
SMARTSM003803.1E-36148211IPR001471AP2/ERF domain
PRINTSPR003671.3E-11149160IPR001471AP2/ERF domain
CDDcd000182.72E-14156207No hitNo description
PRINTSPR003671.3E-11171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCFELADQQR GGGGGGAGWP AKRRAGAGGG QDEGAGMAMA AAGTGEVMSE YYQAQELSTM  60
VSALTQVVAG GPWAGSAAGA APRGSAPEQQ PMHGGYAQEI GAPSPELAGS ELSSDTQSAG  120
AAAMEEHHSS AAALASQDPE GPETPRRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFET  180
AEAAARAYDE AALRFRGSRA KLNFPEDARL RPASTTTAGV APAAASSVPL AASVASTSPA  240
VYPGAGGVQG ASGSDYDYLR YQMLLQASTG SQGTLLPFYA AAGGGVGMTN PYGGGGAAMT  300
NPYGGAAGGG STTGFLGSYY SFPPSSVSVA TVPSSTSSAS GYYYSSPHDS QQSEASAAAA  360
DWNWESTLAW PDSSQPYPPP PHTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23149205663ATERF1
3gcc_A4e-23149205663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.77090.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G369100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032861e-101AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149571e-101AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-101CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311254.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A1B6Q7740.0A0A1B6Q774_SORBI; Uncharacterized protein
STRINGGRMZM2G149756_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-19ethylene response factor 110