PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G363600.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 486aa MW: 52794.4 Da PI: 6.3023 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.5 | 5.3e-12 | 174 | 204 | 3 | 33 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 +k err+++NReAAr+sR+RKka++++Le+ Sobic.003G363600.7.p 174 HDKTERRLAQNREAARKSRLRKKAYVQQLET 204 589**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.8E-8 | 172 | 248 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.071 | 174 | 218 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-8 | 174 | 218 | No hit | No description |
Pfam | PF00170 | 6.0E-9 | 175 | 205 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.06E-7 | 176 | 219 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 179 | 194 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.2E-29 | 257 | 331 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MLLLQGWDFQ PAAAAAAYFG FGELEEALIH GGGGAGNAHG VDPGVIIKND VAQAKSAAAA 60 GYLAGAGRPP TLEIFPSWPM RHQQQLHSGN SQSVGSTTDS SSAQNTMSQM ELVSPASSAP 120 RQEVMMVTTD DYSYKPGLAA APAAAAAPPP SFQQHHPLPL QLHGGDGGGG GGDHDKTERR 180 LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QVEHELQRAR SQGLFVGGCS AAGDMSSGAA 240 MFDMEYARWL DDDSKRLAEL RAGLQAQLLD GNLGLIVEEC MQHYDELFQL KAALARSDVF 300 HLLTGAWATA AERCFFWMGG FRPSELLKIL IPQLDPLTEQ QLLGICNLQQ SSEQAEEALA 360 QGLHQLHQSL ADTVATGTLN DGAATPNYMN IMAVAIDKLA CLENFYQQAD NLRQQTLHQM 420 RRILTTRQAA RCFLSIGEYY SRLRALSNLW ASRPRDNFIG TESLSPTATE LQALHHQQQN 480 QFTGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.8715 | 0.0 | root| shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G363600.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF036949 | 0.0 | AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312446.1 | 0.0 | transcription factor LG2 isoform X2 | ||||
Swissprot | O49067 | 0.0 | LG2_MAIZE; Transcription factor LG2 | ||||
TrEMBL | A0A1W0W0L5 | 0.0 | A0A1W0W0L5_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G060216_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-127 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G363600.7.p |
Publications ? help Back to Top | |||
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