PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G363600.3.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 446aa MW: 49084.5 Da PI: 7.2244

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G363600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.8e-11	135	164	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sobic.003G363600.3.p 135 AKTERRLAQNREAARKSRLRKKAYVQQLET 164 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-8	132	208	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.9E-8	134	178	No hit	No description
PROSITE profile	PS50217	9.243	134	178	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-8	135	165	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.91E-7	136	179	No hit	No description
PROSITE pattern	PS00036	0	139	154	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.4E-29	217	291	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MVHGEESSWR MERAALPLNQ AFAYGAQAHA AAAPPTCFLD FQPAAAAAAY FGFGELEEAL 60 IHGGGGAGNA HGVDPGVIIK NDVAQAKSAA AAGYLAGAGR PPTLEIFPSW PMRHQQQLHS 120 RKHGSTRKDG KLVDAKTERR LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QVEHELQRAR 180 SQGLFVGGCS AAGDMSSGAA MFDMEYARWL DDDSKRLAEL RAGLQAQLLD GNLGLIVEEC 240 MQHYDELFQL KAALARSDVF HLLTGAWATA AERCFFWMGG FRPSELLKIL IPQLDPLTEQ 300 QLLGICNLQQ SSEQAEEALA QGLHQLHQSL ADTVATGTLN DGAATPNYMN IMAVAIDKLA 360 CLENFYQQAD NLRQQTLHQM RRILTTRQAA RCFLSIGEYY SRLRALSNLW ASRPRDNFIG 420 TESLSPTATE LQALHHQQQN QFTGF*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MVHGEESSWR MERAALPLNQ AFAYGAQAHA AAAPPTCFLD FQPAAAAAAY FGFGELEEAL  60
IHGGGGAGNA HGVDPGVIIK NDVAQAKSAA AAGYLAGAGR PPTLEIFPSW PMRHQQQLHS  120
RKHGSTRKDG KLVDAKTERR LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QVEHELQRAR  180
SQGLFVGGCS AAGDMSSGAA MFDMEYARWL DDDSKRLAEL RAGLQAQLLD GNLGLIVEEC  240
MQHYDELFQL KAALARSDVF HLLTGAWATA AERCFFWMGG FRPSELLKIL IPQLDPLTEQ  300
QLLGICNLQQ SSEQAEEALA QGLHQLHQSL ADTVATGTLN DGAATPNYMN IMAVAIDKLA  360
CLENFYQQAD NLRQQTLHQM RRILTTRQAA RCFLSIGEYY SRLRALSNLW ASRPRDNFIG  420
TESLSPTATE LQALHHQQQN QFTGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.8715	0.0	root\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269\|PubMed:9490265}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G363600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312448.1	0.0	transcription factor LG2 isoform X4
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1B6Q744	0.0	A0A1B6Q744_SORBI; Uncharacterized protein
STRING	Sb03g040530.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-131	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G363600.3.p

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]