PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G353000.1.p
Common NameSb03g039550, SORBIDRAFT_03g039550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 360aa    MW: 37695.8 Da    PI: 6.5941
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G353000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31162218258
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                           +Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s+edp+++ +tYeg H h
  Sobic.003G353000.1.p 162 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTEDPEMLMVTYEGPHLH 218
                           7******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29158219IPR003657WRKY domain
SuperFamilySSF1182905.49E-26159220IPR003657WRKY domain
SMARTSM007742.2E-35161220IPR003657WRKY domain
PROSITE profilePS5081127.519162221IPR003657WRKY domain
PfamPF031061.5E-25163218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGDGDYGLHP EPGAADVAVW PGELDEQLIT ELLSDDSLLL GTLPPPQQVP AGDDPEEQHC  60
SRDTGGASSA PAAPCISGGG TAAEHRELLP QPEAVSRALC SVYTGPTIRD IEKALSTTRP  120
YPWSWSSSRY SPTMHLGRLG ALSRAPEKYT TKVRSCGGKT PSDGYKWRKY GQKSIKNNPH  180
PRSYYKCTSS RCGAKKHVEK STEDPEMLMV TYEGPHLHGP QPLFPRRQWL SIDLSGAAAA  240
AAAASKTKQQ QARVSSSSSP AASAALATSD DGGGGWPPSQ QTTTRGRDTE AARGGPTAAA  300
GETATPGPPQ IGRAGDAVST QPRLVLTADS CDDGSAASVP PPWASAAFPH CDSPPMMTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-201632181974Probable WRKY transcription factor 4
2lex_A1e-201632181974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G353000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016168e-78FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458749.10.0WRKY transcription factor WRKY62
TrEMBLA0A1W0W0E70.0A0A1W0W0E7_SORBI; Uncharacterized protein
STRINGSb03g039550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-29WRKY DNA-binding protein 49