PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G352600.1.p
Common NameSb03g039510, SORBIDRAFT_03g039510
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 808aa    MW: 89063.9 Da    PI: 6.2665
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G352600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.31.4e-1174318002374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++lL++cA+ v+++d + a++lL++++++asp+gd  qRla++f+++L+arla+++s++yk++ +++ +    +++l+a++l+  ++P+
  Sobic.003G352600.1.p 431 ETLLVHCAQSVATDDRRGATELLKQIRQHASPNGDGDQRLAHCFANGLEARLAGNGSQIYKSVIMTRFP---CTDVLKAYQLYLAACPF 516
                           789*************************************************************99999...9**************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                            k+sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfe
  Sobic.003G352600.1.p 517 KKISHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRRGGPPRLRITGIDTPQPGfrPAERIEETGRYLKDYAQTFNVPFE 605
                           ***************************************************************************************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f++ + +r+e++++e+L+++++E l+Vn++++ ++l+desv  es+r+ vL+++++++P+++++   + ++n++ F+ rf eal++ysa
  Sobic.003G352600.1.p 606 FRA-IPSRFEAVQIEDLHIEKDELLIVNSMFKFKTLMDESVVAESPRNMVLNTIRKMNPHLFIHGIVNGSYNAPFFVSRFREALYHYSA 693
                           ***.7************************************************************************************ PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           ++d+le+++p ++e+r  +E +l+gre+ nv++ceg er er et+++W+ r ++aGFk++p++++++k a+  +r +++d + ++e++
  Sobic.003G352600.1.p 694 IYDMLETNIPGDNEQRLLIESALFGREAINVISCEGLERMERPETYKQWQVRNQRAGFKQLPINQDIMKRAREKVRCYHKD-FIIDEDN 781
                           *******************************************************************************77.******* PP

                  GRAS 356 gslvlgWkdrpLvsvSaWr 374
                            +l++gWk+r ++++S W+
  Sobic.003G352600.1.p 782 RWLLQGWKGRIILALSTWK 800
                           ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.458404781IPR005202Transcription factor GRAS
PfamPF035144.9E-115431800IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MVMDAGLHEP CALLPGSKRD GHMPIYPQIA AAANGFTAEE LESLLFLSPD GVASAAGGVG  60
GGSYLNVAPT TVVPPARTDR RASPPPSVAQ PDDSEAFSDI VLGYINRMLM AEDIDDKFEH  120
YPEHPALLAA EKPFLEILTE RPSSSGGSAV DSPDGSSVGN SCYSAGSCTC ATATAASDAF  180
AAVLTPALDF PSAAFLQPPQ LYQDLSPESS VVEAGGAWPY DSTEFYQLQQ SNLLSQSSSF  240
ASSNGSGVTL SDGFESLLSS PGVMPDVGIT DFAVQSQQVM QFCRGLEEAS KFLPDESKLV  300
IDLEKPASVT SLLANIKGEN RFAEVKTEKA DVDAAIHRGK KHFYGDDLDA EEGRCSKHSA  360
PAIDTDHLVR EMMDKVLLCN GEMCSKGVKE LREALQHDVA KNSHGVHGKG SGHGKGRGKK  420
QPKKKEVVDL ETLLVHCAQS VATDDRRGAT ELLKQIRQHA SPNGDGDQRL AHCFANGLEA  480
RLAGNGSQIY KSVIMTRFPC TDVLKAYQLY LAACPFKKIS HFFANQTIMN AVEKAKKVHI  540
VDYGIYYGFQ WPCLIQRLST RRGGPPRLRI TGIDTPQPGF RPAERIEETG RYLKDYAQTF  600
NVPFEFRAIP SRFEAVQIED LHIEKDELLI VNSMFKFKTL MDESVVAESP RNMVLNTIRK  660
MNPHLFIHGI VNGSYNAPFF VSRFREALYH YSAIYDMLET NIPGDNEQRL LIESALFGRE  720
AINVISCEGL ERMERPETYK QWQVRNQRAG FKQLPINQDI MKRAREKVRC YHKDFIIDED  780
NRWLLQGWKG RIILALSTWK PDHKSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-514348008375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.19920.0panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G352600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730110.0EU973011.1 Zea mays clone 391695 SCARECROW-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456620.10.0scarecrow-like protein 9
TrEMBLC5XPP90.0C5XPP9_SORBI; Uncharacterized protein
STRINGSb03g039510.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-179GRAS family protein