PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G340100.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 193aa MW: 20666.7 Da PI: 8.4976 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 58 | 157 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+kll ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ Sobic.003G340100.4.p 58 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKLLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNA 146 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ael+++++e Sobic.003G340100.4.p 147 LEAELEAVRAE 157 ******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.057 | 57 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-40 | 58 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSTESRERVD EIGKKIKREP DTAALAVAVA SASTVPADNH IPHRLGLGLG GVLNTLTPCA 60 ACKLLRRRCA QECPFAPYFS PHEPHKFAAV HKVFGASNVS KLLLEVAEGE RADAASSLVY 120 EANLRLRDPV YGCMGAISML QQQVNALEAE LEAVRAEILK HRPGGCSHRR RRVGDVDVVG 180 GVRCGSRAAG EY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 58 | 161 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 58 | 161 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G340100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068699 | 0.0 | BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456560.2 | 1e-112 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q8L5T5 | 3e-65 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1W0W051 | 1e-137 | A0A1W0W051_SORBI; Uncharacterized protein | ||||
STRING | Sb03g038410.1 | 1e-111 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-59 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G340100.4.p |
Publications ? help Back to Top | |||
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