PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G340100.3.p | ||||||||
Common Name | Sb03g038410, SORBIDRAFT_03g038410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 26603.1 Da PI: 7.5971 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.9 | 2.2e-40 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+kll ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ Sobic.003G340100.3.p 57 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKLLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNA 145 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ael+++++e Sobic.003G340100.3.p 146 LEAELEAVRAE 156 ******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.057 | 56 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-40 | 57 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSTERERVDE IGKKIKREPD TAALAVAVAS ASTVPADNHI PHRLGLGLGG VLNTLTPCAA 60 CKLLRRRCAQ ECPFAPYFSP HEPHKFAAVH KVFGASNVSK LLLEVAEGER ADAASSLVYE 120 ANLRLRDPVY GCMGAISMLQ QQVNALEAEL EAVRAEILKH RYRQAGGGNR LIDDDAHATA 180 SFVAPASAPV HVNDVVSVVE AGQEVAATGG GASGMSTSSA VYVAEAEQPA STNHYSSRNP 240 NRKRIRFYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-43 | 57 | 167 | 11 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-43 | 57 | 167 | 11 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G340100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068699 | 0.0 | BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311604.1 | 1e-175 | LOB domain-containing protein 15 isoform X3 | ||||
Swissprot | Q8L5T5 | 2e-68 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1W0W049 | 0.0 | A0A1W0W049_SORBI; Uncharacterized protein | ||||
STRING | Sb03g038410.1 | 1e-174 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-62 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G340100.3.p |
Entrez Gene | 8057725 |
Publications ? help Back to Top | |||
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