PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G340100.2.p

Common Name

Sb03g038410, SORBIDRAFT_03g038410

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 250aa MW: 26313.6 Da PI: 6.5064

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G340100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.9	2.2e-40	58	157	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+kll ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ Sobic.003G340100.2.p 58 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKLLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNA 146 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ael+++++e Sobic.003G340100.2.p 147 LEAELEAVRAE 157 ****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.057	57	158	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-40	58	155	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSTESRERVD EIGKKIKREP DTAALAVAVA SASTVPADNH IPHRLGLGLG GVLNTLTPCA 60 ACKLLRRRCA QECPFAPYFS PHEPHKFAAV HKVFGASNVS KLLLEVAEGE RADAASSLVY 120 EANLRLRDPV YGCMGAISML QQQVNALEAE LEAVRAEILK HRYRQAGGGN RLIDDDAHAT 180 ASFVAPASAP VHVNDVVSVV EAGQEVAATG GGASGMSTSS AVYVAEAEQP ASTNHYSSRN 240 PSEHPAYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-43	58	168	11	121	LOB family transfactor Ramosa2.1
5ly0_B	8e-43	58	168	11	121	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G340100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068699	0.0	BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456560.2	0.0	LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	1e-66	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1W0W074	0.0	A0A1W0W074_SORBI; Uncharacterized protein
STRING	Sb03g038410.1	1e-180	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-60	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Sobic.003G340100.2.p
Entrez Gene	8057725

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]