PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G337700.1.p
Common NameSb03g038190, SORBIDRAFT_03g038190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 378aa    MW: 40924.6 Da    PI: 6.2426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G337700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY567.8e-18120186259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SS........STTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversae........dpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK++++ ++ r Y+rC+   +C++kkkv+++++         p ++e+tY +eH+++
  Sobic.003G337700.1.p 120 KDGYEWRKYGQKNIQNCNYVRYYFRCSRDrRCEAKKKVQQQDDgsgrgqplSPPMFEVTYVNEHTCH 186
                           7**************************999*********9985222222223569*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-23107186IPR003657WRKY domain
SuperFamilySSF1182905.23E-19115186IPR003657WRKY domain
SMARTSM007742.5E-24119187IPR003657WRKY domain
PfamPF031061.1E-21120186IPR003657WRKY domain
PROSITE profilePS5081113.196121159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAFDRDAKLF DVLANGYHLN TQLQALLVGR PLNSIGQQEA MAFSQELSRV FKLSMSMLNC  60
NTVTRLRTAP EIRAGDSSGV IIQAVKDKRA RSDNGEVVTP VKKSREDGVT RKEITASPYK  120
DGYEWRKYGQ KNIQNCNYVR YYFRCSRDRR CEAKKKVQQQ DDGSGRGQPL SPPMFEVTYV  180
NEHTCHLLRA IANDGDAARM AASPRTTNRW SRVLGVVDTA RDDDHGGGVL FNDLSSSFPR  240
IGGGGGDDAQ ENETIVSCLA TVISGGAAPS PPPWPPAAAE AGASDHPAAA SSYGVPPPMQ  300
ASGHSASVAE DGGGTTTTTT TMMIDDMDTD FCWDPSSFCA VGEGDQLMMD HRDMHVDVAR  360
LADTVWPRHT SAGASWR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G337700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456548.20.0uncharacterized protein LOC8057713
TrEMBLC5XNA10.0C5XNA1_SORBI; Uncharacterized protein
STRINGSb03g038190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Representative plantOGRP1688833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.12e-15WRKY DNA-binding protein 62