PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G337600.1.p
Common NameSb03g038180, SORBIDRAFT_03g038180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 265aa    MW: 29568.4 Da    PI: 6.4321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G337600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.73.1e-2068127358
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58 
                           Dg+ WrKYGqK++k++e+pr Y+rC+++   +C + k +++++ +dp + e+tY+ eH++
  Sobic.003G337600.1.p  68 DGHLWRKYGQKKIKDAEYPRLYFRCSYRedrQCLASKLLQQKNgDDPPLYEVTYTYEHTC 127
                           9**************************99999******9877637899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.03E-2059130IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-2060130IPR003657WRKY domain
SMARTSM007741.3E-3066129IPR003657WRKY domain
PROSITE profilePS5081116.28368130IPR003657WRKY domain
PfamPF031061.6E-2168127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKREQSFEFG DPSAQDAMGS AASESSYSPP GAVFGLSPPE SASPRSGRHN RRRDRPSWVR  60
LTYTPYFDGH LWRKYGQKKI KDAEYPRLYF RCSYREDRQC LASKLLQQKN GDDPPLYEVT  120
YTYEHTCGAP PVSFPDIVAE PPPAAREGLV LRFDSPGGHG GHARMQQNGH CQQSTSRSPF  180
MMLSFGSRSQ THDQHPAVFR SDLEAGSSSF PTEAPPAPPP PANGDGGDML STLNSFAYDF  240
DNQMHFGDHT YLPHNNSNYD YDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-15681271068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G337600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456547.10.0probable WRKY transcription factor 30
TrEMBLC5XNA00.0C5XNA0_SORBI; Uncharacterized protein
STRINGSb03g038180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.16e-17WRKY DNA-binding protein 62