PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G331100.1.p | ||||||||
Common Name | Sb03g037680, SORBIDRAFT_03g037680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 557aa MW: 60191.8 Da PI: 4.9008 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l Sobic.003G331100.1.p 47 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 94 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 1e-16 | 100 | 143 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Sobic.003G331100.1.p 100 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 143 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF001693 | 7.8E-247 | 1 | 556 | IPR016310 | Transcription factor, GAMYB |
PROSITE profile | PS51294 | 16.625 | 42 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 44 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 46 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 47 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 48 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.71E-11 | 49 | 94 | No hit | No description |
PROSITE profile | PS51294 | 25.656 | 95 | 149 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-17 | 99 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 100 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 102 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.14E-13 | 102 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MYRVKSEGEG DCEMMLQDQM DSPVADDVSS GGGSPHPHRG AGPPLKKGPW TSAEDAILVD 60 YVKKHGEGNW NAVQKNTGLF RCGKSCRLRW ANHLRPNLKK GAFTPEEERL IIQLHAKMGN 120 KWARMAAHLP GRTDNEIKNY WNTRIKRCQR ASLPIYPASV CNQSSNEDQQ VSGDYNGGEN 180 ISNDLLSGNS LYLPDFTSDN FIANPEALSY APQLSAVSIS NLLGQSFASK NCSFMDQVDQ 240 AGMLKQSSCV LPALSDAIDG VLSSVDQFSN DSEKLKQALG FDYLNEANAS SKSIAPFGVA 300 LTGSHAFLNG NFSASRPTNG PLKMELPSLQ DTESDPNSWL KYTVAPAMQP TELVDPYLQS 360 PSATPSVKSE CASPRNSGLL EELLHEAQAL RSGKNQQPSV RSSSSSAGTP CETTTVVSPE 420 FDMGQEYWEE QPGSFLSEYA HFSGNSLTES TPVSAASPDF FQFSKISPAQ SPSMGSGEQA 480 LEPKHESAAS PHPENLRPDA LFSGNTADPS IFNNAIAMLM GNGINAEYKH VLGDGVVLDS 540 SSWNNMPHAF QMTEFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 43 | 147 | 3 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.10452 | 0.0 | callus| embryo| panicle| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G331100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970886 | 0.0 | EU970886.1 Zea mays clone 353123 transcription factor GAMYB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313406.1 | 0.0 | transcription factor GAMYB | ||||
Swissprot | A2WW87 | 0.0 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A1B6Q6N8 | 0.0 | A0A1B6Q6N8_SORBI; Uncharacterized protein | ||||
STRING | Sb03g037680.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3947 | 36 | 64 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 6e-84 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G331100.1.p |
Entrez Gene | 8082420 |