PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G324500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 18716.2 Da PI: 10.2819 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 29 | 79 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a+++a++ l+g+ Sobic.003G324500.1.p 29 RFRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPAEAALAYDRAARTLRGA 79 69*******.**********883....5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.8E-31 | 29 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-33 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.957 | 29 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.97E-29 | 29 | 88 | No hit | No description |
PRINTS | PR00367 | 1.1E-9 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDPTLRAVLG HGGGDGGARG GGGGGGAERF RGVRKRPWGR YAAEIRDPWK KTRVWLGTFD 60 TPAEAALAYD RAARTLRGAK AKTNFPDHAG HLAPLLRLRQ PPPQPVSFGG VNNVDCPTTP 120 WQFVYLQTPT TAAAPLPPTT AAMPPLVTTE PPSTALELGR GQRCGGLPFD LNEAPSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 21 | 86 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G324500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728261 | 4e-81 | KJ728261.1 Zea mays clone pUT6538 AP2-EREBP transcription factor (EREB158) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311437.1 | 1e-124 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | C5XMF2 | 1e-123 | C5XMF2_SORBI; Uncharacterized protein | ||||
STRING | Si003053m | 7e-57 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 8e-25 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G324500.1.p |