PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G324400.2.p | ||||||||
Common Name | 37, AP, AP37, Sb03g037080, SORBIDRAFT_03g037080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 24932.3 Da PI: 9.3711 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAaka++aa+++++g+ Sobic.003G324400.2.p 32 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAAKAYDAAAREFRGA 83 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.15E-19 | 32 | 90 | No hit | No description |
Pfam | PF00847 | 1.6E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.184 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 33 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.7E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAPRVADKSP LPPATGLGLG VGGVVGGVGM GPHYRGVRKR PWGRFAAEIR DPAKKSRVWL 60 GTYDTAEEAA KAYDAAAREF RGAKAKTNFP FPSQCAVAAG GAGSPCSNST VDSSGGASGC 120 AVQAPMQAMP LPPALDLDLF HRAAAVNAVT AGGMRFPFKG YPVARPTPHQ YFFYEQAAAA 180 AAAAAGYRML KVAPPPVTVA AVAQSDSDSS SVVDHTPSPP AVTAKKEVGF ELDLNWPPPA 240 EN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 31 | 91 | 3 | 64 | ATERF1 |
3gcc_A | 2e-22 | 31 | 91 | 3 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.10655 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G324400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF714972 | 0.0 | JF714972.1 Sorghum bicolor AP 37 protein (AP 37) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456479.2 | 1e-173 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | C5XME9 | 1e-172 | C5XME9_SORBI; AP 37 protein | ||||
STRING | Sb03g037080.1 | 1e-173 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-22 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G324400.2.p |
Entrez Gene | 8082391 |