PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G320300.1.p
Common NameSb03g036720, SORBIDRAFT_03g036720
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 524aa    MW: 53425.5 Da    PI: 10.0756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G320300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-05274296223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ Cg+ Fs ++ L+ H  + H
  Sobic.003G320300.1.p 274 SCHRCGEQFSKWEALEAHHLSkH 296
                           7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704273301IPR007087Zinc finger, C2H2
PROSITE patternPS000280275296IPR007087Zinc finger, C2H2
SuperFamilySSF563991.32E-22298522No hitNo description
Gene3DG3DSA:3.90.228.104.4E-10322494IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MGERRRRASA ASFGGGGGGG GGGSVVPARA EEGKAAAPGK APPPTVWFAL KRSLHCRSEP  60
SEVHVPRAKA AGPVAAGGAA VGGGGHLSSI VTTKRATRSG CSRSIANLRD VIHGSKRHPG  120
QPPSSCSPRS IGSSEFLNPI AHEVVLSTNS RCELKITGFG AGCGGLAAVG VGGGTGAGAG  180
AGGAHDADSG GVVSSFVGTL RPGTPGPAWA GAGGHGLPYS GSVRGGGGVR CTPPRSPNVL  240
LERNGSVVNG NGHRVSCDET GTKHGAGKGS GGLSCHRCGE QFSKWEALEA HHLSKHAVTE  300
LLEGDSSRKI VEIICRTSLL KSESSCVRIE RVFKVHNTQR TLSRFEEYRE AVKLKASKLP  360
KKHPRCLADG NELLRFHGAT LSCALGGAGS GNSSLCASDK CAVCRIIRHG FSAKKEGKAG  420
VGVFTTSTSG RAFESIEAAP GPGAGDDGAD QLQLGTTTTR KALLVCRVIA GRVHKPLDNL  480
KEFVGQTGFD SLAGKVGPYS NIEELYLLNP RALLPCFVVI CKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G320300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9725840.0EU972584.1 Zea mays clone 383925 nucleic acid binding protein mRNA, complete cds.
GenBankFM2521260.0FM252126.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-2 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458613.10.0uncharacterized protein LOC8054725
TrEMBLC5XLS90.0C5XLS9_SORBI; Uncharacterized protein
STRINGSb03g036720.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-101C2H2 family protein