PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G311100.1.p | ||||||||
Common Name | Sb03g035920, SORBIDRAFT_03g035920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 23126.3 Da PI: 8.5938 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.3 | 4.6e-37 | 42 | 146 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrr+C+++Cv+ap+f + +++fa+vhk+FGasnv k+l+++p r+da+s+++yeA+ar+ dPvyG+vg+il+lq Sobic.003G311100.1.p 42 PCGACKFLRRRCVPGCVFAPHFggsggGGAGAAQFAAVHKVFGASNVAKMLSRVPVALRRDAASTVCYEAQARIADPVYGCVGTILALQ 130 7*********************7665544667********************************************************* PP DUF260 85 qqleqlkaelallkee 100 +q++ ++ael+ +++e Sobic.003G311100.1.p 131 HQVALVQAELSIAQTE 146 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.441 | 41 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.3E-41 | 42 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSRATQSPSK RANAASVAAV AAAGPAHAQG EEASSLWGAG APCGACKFLR RRCVPGCVFA 60 PHFGGSGGGG AGAAQFAAVH KVFGASNVAK MLSRVPVALR RDAASTVCYE AQARIADPVY 120 GCVGTILALQ HQVALVQAEL SIAQTELLNH RLALATVHPA YTVASPTSQM VNCSSLSQAV 180 DFIDTEPKCF PPPLLPLPSQ QQREQERERG SPTDVFAHNT PGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 38 | 150 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 38 | 150 | 7 | 114 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G311100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086412 | 0.0 | BT086412.1 Zea mays full-length cDNA clone ZM_BFc0163O13 mRNA, complete cds. | |||
GenBank | KJ727726 | 0.0 | KJ727726.1 Zea mays clone pUT5666 LOB transcription factor (LOB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456415.1 | 1e-162 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-51 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | C5XLJ4 | 1e-161 | C5XLJ4_SORBI; Uncharacterized protein | ||||
STRING | Sb03g035920.1 | 1e-161 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-40 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G311100.1.p |
Entrez Gene | 8072131 |