PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G303800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 592aa    MW: 64995.8 Da    PI: 8.4912
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G303800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.65.2e-13155194242
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                           +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Sobic.003G303800.2.p 155 KKKCCNCRNSRCLKLYCECFASGTHCDG-CNCTNCFNNPEN 194
                           799*************************.********9875 PP
2TCR50.93.1e-16238277140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Sobic.003G303800.2.p 238 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 277
                           589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-13154194IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.413155278IPR005172CRC domain
PfamPF036382.8E-9156191IPR005172CRC domain
SMARTSM011148.4E-20238279IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12241276IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAGKEQGGPP PPQRPPVPAA SMQPPIKKLV RQLDFNSAAL AGNPAMAAAA AAVSRALQPR  60
ALPVGFQHPQ HVRAAMPMGM PQQLHQRILP VMRPHQVVGH VPLPRHAVPM AVPVPQLRPM  120
PPQPVQRPPV AVPLKPESPK PRARLYEGKD STPTKKKCCN CRNSRCLKLY CECFASGTHC  180
DGCNCTNCFN NPENEVARRE AIEATLERNP DAFRPKIGSS PHTNRNNEVS SDLPLVGKHN  240
KGCHCKKSGC LKKYCECFQA NILCSENCKC MDCKNFEGSE ERRNLFQGDH KNAINMQQAT  300
NAAVNGAIGA TGFPSPSTSR KRKHIDPSLD NSNKEHVAHR NYHISQKNAV PDGPIPISQS  360
AHPPNLGPFK VTYRPLLADI VQEEDIKELC KLLVVVSGEA AKTYAGRKTM EERVGEKEDE  420
RGGQKEDDRA GSLALTNHDR EGNNQDPDQK ASIDDHSSRG THTGKAILEE SRPNCADDQK  480
SNRPMSPGTL ALLCDEEVKM CDEQDTVFTT SQNAVPQQTI TVNQNQSALY AEQERVVLTE  540
FRDCLRKFVE RGRNKERRYS SMAIESETSA NPGQVCTQGV TMIKGIVFSP L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-2915928714132Protein lin-54 homolog
5fd3_B5e-2915928714132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G303800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672400.0BT067240.1 Zea mays full-length cDNA clone ZM_BFb0345D13 mRNA, complete cds.
GenBankHQ8586710.0HQ858671.1 Zea mays clone UT1107 CPP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312359.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A1B6Q6870.0A0A1B6Q687_SORBI; Uncharacterized protein
STRINGSb03g035240.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein