PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G301700.1.p

Common Name

Dof12, Sb03g035080, SORBIDRAFT_03g035080

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 261aa MW: 27855.2 Da PI: 9.1352

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G301700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.5	2.5e-37	143	197	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC s+ntkfCy+nny+++qPr+fCk C+ryWt+GGalrnvPvG+grrkn+ Sobic.003G301700.1.p 143 PLPCPRCRSRNTKFCYFNNYNVNQPRHFCKDCHRYWTAGGALRNVPVGAGRRKNR 197 679**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.733	144	198	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-30	144	197	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-19	153	197	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MLSHVEMAPA AGGFKLFGKV ITRTQCAAET APPAVPTQEQ EPAAAASRST AAFARERDDP 60 DERDQPMVKR EAAAAAASDH DFVVVADKQQ QQHSAAAGGP APASESDDSK GQQQHPRPRQ 120 HHQQQHQDTV EARAAAAASS APPLPCPRCR SRNTKFCYFN NYNVNQPRHF CKDCHRYWTA 180 GGALRNVPVG AGRRKNRPLG PVGAVPVPVP VPVPVPAHLH PAAAAGFVLG FPGQHPSSPT 240 TSPSTAVYAE RWPVCPDRRF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G301700.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582409	0.0	KC582409.1 Sorghum bicolor dof12 protein (dof12) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458519.2	0.0	uncharacterized protein LOC8075606
TrEMBL	A0A1B6Q662	0.0	A0A1B6Q662_SORBI; Uncharacterized protein
STRING	Sb03g035080.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	4e-26	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G301700.1.p
Entrez Gene	8075606

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]