PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G296300.1.p
Common NameSb03g034670, SORBIDRAFT_03g034670
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 311aa    MW: 33692.1 Da    PI: 4.463
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G296300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-3098156259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnhe
  Sobic.003G296300.1.p  98 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFDHNHE 156
                           69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-3193158IPR003657WRKY domain
SuperFamilySSF1182901.05E-2595158IPR003657WRKY domain
SMARTSM007743.2E-3697157IPR003657WRKY domain
PROSITE profilePS5081132.00798158IPR003657WRKY domain
PfamPF031061.0E-2599156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSSAEDGYCS SDSPRAESPD EPLLPAAVAD ADAESPRAAG SGMNKRERDL SDLPASPSSP  60
LPPAKRSRRS VEKRVVSVPL AECGDRPRGA TGEGPPPSDS WAWRKYGQKP IKGSPYPRGY  120
YRCSSSKGCP ARKQVERSRA DPTVLLVTYT FDHNHEAPQP KSSSCHQQGK PSTRPPAPKP  180
EPVVEQDELG PEHELAETEV PEQQEPVEEE QEQKVVPGLA GPEAEAEAEP TATVAPAAAE  240
EDESFDFGWF DQYPTWHRSA LYAPLLPPEE WERELQGEDA LFAGLGELPE CAVVFGRRRE  300
LSLATTAPCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1873158679Disease resistance protein RRS1
5w3x_D1e-1873158679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.77020.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G296300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586170.0KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458491.10.0probable WRKY transcription factor 65
TrEMBLC5XK430.0C5XK43_SORBI; Uncharacterized protein
STRINGSb03g034670.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-35WRKY DNA-binding protein 65