PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G295900.1.p
Common NameSb03g034630, SORBIDRAFT_03g034630
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 435aa    MW: 48351.4 Da    PI: 4.9392
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G295900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34141042101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F +g+
  Sobic.003G295900.1.p  14 FLSKTYEMVDDPATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEDFIRGQ 93 
                           9***************************************************************9998.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           ++ l++i+r+k
  Sobic.003G295900.1.p  94 QHRLKNIHRRK 104
                           *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.26E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.3E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEAGGGGASS LPPFLSKTYE MVDDPATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKIDPE QWEFANEDFI RGQQHRLKNI HRRKPIFSHS SHTGSGPLAD  120
TERRDYEEEI ERLKSDNAAL TSELENNAQK KLVTEKRMQD LEDKLIFLED RQKNLMAYVR  180
DIVQAPGFLA SFVQQPDHHG KKRRLPIPIS LHQDANTEGN QIVHGGLTDP PACRESFDKM  240
ESSLNSLESF LREASEAFNI SYDDGLPGPS SAVVITELHS SGESDPHVPS PVSRMHTSSA  300
GAGDSLSSRD VTGSTSCAES PPLPQMQSCT DPRTKVSEID VNMEPAVTET GLSRDQPVEE  360
PPHAATGVND GFWQQFLTEQ PGSDAHQEAQ SERRDGDDKG DQTRIGDREK FWWGKKNVEQ  420
MTEKLGHLTS VEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-29410319129Heat shock factor protein 1
5d5v_B4e-29410319129Heat shock factor protein 1
5d5v_D4e-29410319129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.63010.0callus| embryo| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G295900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280580.0KJ728058.1 Zea mays clone pUT6204 HSF transcription factor (HSF26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456359.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLC5XK400.0C5XK40_SORBI; Uncharacterized protein
STRINGSb03g034630.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.16e-90HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]