PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G293100.1.p
Common NameSb03g034360, SORBIDRAFT_03g034360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 413aa    MW: 42453.5 Da    PI: 5.5954
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G293100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.8e-17287321135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +C t  Tp+WR gp g+ktLCnaCG++y++ +l
  Sobic.003G293100.1.p 287 CLHCETDRTPQWRTGPMGPKTLCNACGVRYKSGRL 321
                           99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-16281331IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-15281318IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.716281317IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-15283344No hitNo description
CDDcd002021.38E-13286333No hitNo description
PROSITE patternPS003440287312IPR000679Zinc finger, GATA-type
PfamPF003208.8E-15287321IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEAAASSAEY GYYGGGAAGP RERKTTAAAG CGDHFVVDDL LALPYDDDDE EEGGGEAAPA  60
GDGGEAPPPC LQPAVDARHG VVGLVKEERG GGGLGNFSAD SSTVTALDSC SNSFSGLADG  120
DFPGEFCEPY DQLAELEWLS NYMGEGEESF AAEDLEKLKL ISGGFSPALP PAHVAPAAAA  180
SAAAASAAQP GMFLPEAPVP AKARSKRSRA APGNWSSRLL VLPPTPASPP SPASMAAISP  240
AESGISAQAF PARKPSKKKD AVPAPPSSVS AVAQPGGSAA STEGRRCLHC ETDRTPQWRT  300
GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVMSKHSN SHRKVLELRR QKEVVQQPHP  360
HVIAGGGGPA GGLMRMQSTM LFDGPSAPPI VAAGDDFLIH HHLGTADYRQ LI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G293100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9631211e-125EU963121.1 Zea mays clone 257954 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458475.10.0GATA transcription factor 12
TrEMBLC5XK120.0C5XK12_SORBI; GATA transcription factor
STRINGSb03g034360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-56GATA transcription factor 12