PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G287200.1.p | ||||||||
Common Name | Sb03g033780, SORBIDRAFT_03g033780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 26679 Da PI: 7.6103 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.3 | 6.8e-33 | 167 | 225 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+se+prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Sobic.003G287200.1.p 167 LDDGYRWRKYGQKAVKNSEHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 225 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-33 | 153 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-28 | 161 | 226 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.564 | 162 | 227 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-39 | 167 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 168 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MENQHLQGDE SSSSHALPSF PYFAVPSPPY APPPPSEDQH STLITALQQQ PSSSACNNDD 60 LPPLGLGPDQ LAAVAAPMIL PPMVDWSALL QQASLMGPQL VPGLLQQVPP LEPLDQSGEN 120 DGGDAGSSSS SKEKVVAKGG GGAGRSGKKK ASRPRFAFQT RSVNDILDDG YRWRKYGQKA 180 VKNSEHPRSY YRCTHHTCNV KKQVQRLAKD TSIVVTTYEG VHNHPCEKLM EALSPILKQL 240 QFLSQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-24 | 157 | 224 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-24 | 157 | 224 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G287200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728244 | 1e-145 | KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456305.1 | 0.0 | WRKY transcription factor SUSIBA2 | ||||
TrEMBL | C5XJ41 | 0.0 | C5XJ41_SORBI; Uncharacterized protein | ||||
STRING | Sb03g033780.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 8e-56 | WRKY DNA-binding protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G287200.1.p |
Entrez Gene | 8075540 |