PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G285500.1.p
Common NameSb03g033640, SORBIDRAFT_03g033640
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 320aa    MW: 32239.6 Da    PI: 5.0455
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G285500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.1e-2994152259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ +p+ v++tY+ eH h+
  Sobic.003G285500.1.p  94 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRAEPDKVIVTYSFEHSHS 152
                           69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.28788154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-2990152IPR003657WRKY domain
SuperFamilySSF1182903.4E-2491152IPR003657WRKY domain
SMARTSM007748.5E-3493153IPR003657WRKY domain
PfamPF031066.5E-2595151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDAEWSDGAA AASPPTVSGG ESKPGAAGAV SSSADCPGSP PVSPAPPSTT SPAAAAAAAG  60
SGRRRSANKR VVTVPLADVS GPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS  120
SSKGCPARKQ VERSRAEPDK VIVTYSFEHS HSDAVARAQQ NRQQASKPKA VQRQPVPPEP  180
AAESPSSGSY DVAAATVCGA GAPAAAAAGT EVGGAASVEV RDEFRWLYDG VSVTSSASPS  240
DVEAADEMLY GAMFFGAAAA PPAAPLPDEF VGDVGGLFDY GEGGGEEDAM FAGLGELPEC  300
AMVFRRHAGD GLSVAGGVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-16951511671WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.45590.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G285500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458443.10.0probable WRKY transcription factor 65
TrEMBLC5XJ230.0C5XJ23_SORBI; Uncharacterized protein
STRINGSb03g033640.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Representative plantOGRP1436244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.15e-36WRKY DNA-binding protein 69