PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G276000.1.p | ||||||||
Common Name | Sb03g032800, SORBIDRAFT_03g032800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 226aa MW: 23958.8 Da PI: 8.5814 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.5 | 7.5e-30 | 140 | 198 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++d+++v+++Yeg Hnh Sobic.003G276000.1.p 140 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDKDDQRYVVTMYEGVHNHV 198 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-30 | 127 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.308 | 135 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-26 | 136 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-32 | 140 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-23 | 141 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MHMALSSRSS FAAADVLLPA AMAYRQPCSG GGGGPATSSY FGSRPAAPFF PFGTAAQLDV 60 FECLSDEGGA VPAPPAAVPG AFATPPPPLP LMPAERVVPD AAAGYSSHAR SAAAAAAGEG 120 PPRRTDRIAF RVRSDDEEVL DDGYKWRKYG KKSVKNSPNP RNYYRCSTEG CSVKKRVERD 180 KDDQRYVVTM YEGVHNHVSP GTIYYATQDA ASGRFFVAGM HQPGH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 138 | 200 | 12 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G276000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC196850 | 0.0 | AC196850.2 Sorghum bicolor clone SB_BBc0140O05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458400.2 | 1e-162 | uncharacterized protein LOC8059180 | ||||
TrEMBL | A0A1B6Q5P6 | 1e-163 | A0A1B6Q5P6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g032800.1 | 1e-161 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64810.1 | 1e-35 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G276000.1.p |
Entrez Gene | 8059180 |