PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G275400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 393aa MW: 42660.6 Da PI: 9.944 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.7 | 4.5e-18 | 175 | 271 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 +k+l +sdv+++gr+vlpkk ae++ + k +k l + d ++ + W++k++y ++ks++yvl+ ++ ++vka++L++gDf+v++ Sobic.003G275400.2.p 175 QKELRNSDVSQLGRIVLPKKEAESYlpilMAK--DGKSLCMHDlLNAQLWTFKYRYwfNNKSRMYVLE-NTGDYVKAHDLQQGDFIVIY 260 7999***********************87434..5678*****7888*******9999999999***9.******************** PP E-SSSEE..EEE CS B3 84 ldgrsefelvvk 95 d+ ++ ++v++ Sobic.003G275400.2.p 261 KDD-ENNRFVIG 271 444.55555665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.84E-24 | 173 | 270 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-25 | 173 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.0E-12 | 174 | 276 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.728 | 174 | 276 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.43E-19 | 174 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-14 | 175 | 271 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 393 aa Download sequence Send to blast |
MPARASHPAL ATLRPPGWPR LRAPGLGLAP TGGRWRCLLP HLHPISEPAR HLSPRAPRLR 60 VSARPPHPAI KASPAPTLDA VVVAAAAATA AAATSSLTGM AGINKRRTSP ASTSSSSGGD 120 VLPQRVTRKR RSVRRGARTA ARRPSSAPRP INELDLNTAA LDPDHYATGL RVLLQKELRN 180 SDVSQLGRIV LPKKEAESYL PILMAKDGKS LCMHDLLNAQ LWTFKYRYWF NNKSRMYVLE 240 NTGDYVKAHD LQQGDFIVIY KDDENNRFVI GAKKAGDEQT ATVPQVHEHI HISAALPAPQ 300 AFHDYAGPVA AEADMLAIVP QADEIFDGIL NSLPEIPVAN VRYSDFFDPF GDSMDMANPL 360 SSNNPSVNLA THFHDEKIGS CSFPYPKSGP LM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 7e-42 | 170 | 283 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 7e-42 | 170 | 283 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 126 | 131 | TRKRRS |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers, pollen grains and young developing embryos. {ECO:0000269|PubMed:17913295}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G275400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727970 | 0.0 | KJ727970.1 Zea mays clone pUT6084 ABI3VP1 transcription factor (ABI19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312864.1 | 0.0 | B3 domain-containing protein LFL1 | ||||
Swissprot | A4LBC0 | 1e-126 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | A0A1B6Q5P8 | 0.0 | A0A1B6Q5P8_SORBI; Uncharacterized protein | ||||
STRING | Sb03g032730.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26790.1 | 4e-41 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G275400.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|