PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G272200.1.p
Common NameSb03g032420, SORBIDRAFT_03g032420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 485aa    MW: 51219.5 Da    PI: 7.7422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G272200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13337383455
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Sobic.003G272200.1.p 337 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 383
                           799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4144236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16336387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-15336387No hitNo description
PfamPF000107.6E-11337383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAWSETDAAL FAAVLGRDAA HHLATTPPHL GGPAASASAS APELQARLQD LVERGSGAWT  60
YGIFWQESRA GGRAVLGWGD GHCRDASGGG SASASHDDDD DAAERSVARK RALLRLHALY  120
GGGDGDDEGA DYALRLDRVT AAEMYFLASM YFSFPEGAGG PGHALASGRH AWATVDPHHP  180
RGPGAGAAPA WYVRASLAQS AGLRTVVFLP CKGGVLELGS VVPVRETPET VRAIQTALAV  240
APPPAREECM RIFGKDLSPS GRTPRSGDNW APQQLGVQAT ASKEAAAARP KAPEPPPRSI  300
DFTKPPGKPE QQAGVGEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  360
PKISKMDKAS LLSDAIAYIQ ELEDRLRGGG GCSAARPESP AVEVKAMQDE VVLRVTTPLY  420
AHPVSRVFHA IRDAQLSVAA SDVSVADDAV THTLVLRSAG PEQLTAETVL AAMSRGMTSA  480
TPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26331419282Transcription factor MYC2
5gnj_B2e-26331419282Transcription factor MYC2
5gnj_E2e-26331419282Transcription factor MYC2
5gnj_F2e-26331419282Transcription factor MYC2
5gnj_G2e-26331419282Transcription factor MYC2
5gnj_I2e-26331419282Transcription factor MYC2
5gnj_M2e-26331419282Transcription factor MYC2
5gnj_N2e-26331419282Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318326RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G272200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680150.0EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456225.10.0transcription factor bHLH13
TrEMBLC5XHM50.0C5XHM5_SORBI; Uncharacterized protein
STRINGSb03g032420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.14e-54bHLH family protein