PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G256300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 299aa    MW: 33234.1 Da    PI: 8.6431
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G256300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.66.7e-21106181371
               E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           +++Lr +++    + +k+e+ g++t+neva+e+  e          d+kn+rRR+YD++NVL al++i+k +++ei+w+g
  Sobic.003G256300.2.p 106 GWGLREFSKI---VSKKVESkGRTTYNEVADEICGElkltligqefDEKNIRRRVYDAFNVLIALRVITK-DQKEIKWMG 181
                           689*******...99999999*************************************************.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-33102185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-22104181IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.16E-16107182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.8E-18108181IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011381.3E-26188298IPR014889Transcription factor DP, C-terminal
CDDcd144582.34E-25188287IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-20189290IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.57E-26191290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYTPEYLCIP GPPYLGASCT PKSQSPSPLF SVPLLGDRES TVMAPPCGDA AAAAELTSTR  60
ISEGAGLPPL PPGRGSVGGN AGEGEEEGDT NKKARKEKAG TQRIAGWGLR EFSKIVSKKV  120
ESKGRTTYNE VADEICGELK LTLIGQEFDE KNIRRRVYDA FNVLIALRVI TKDQKEIKWM  180
GLSNFQYEYI KLEETRKELM IRVKNKKKLL QEIERQFDDL QNIKFRNQLL QRPAESANGI  240
CLPFLLVKAS RKARVEIEIS ENSKFAGFDF NCTPFTLHDD VSILEAIRCN NNSIKRAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-20106182989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G256300.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458315.20.0transcription factor-like protein DPB
TrEMBLA0A1W0VYY60.0A0A1W0VYY6_SORBI; Uncharacterized protein
STRINGSb03g031130.11e-164(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP1434844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.17e-54Transcription factor DP