PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G255000.1.p
Common NameSb03g031000, SORBIDRAFT_03g031000
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 315aa    MW: 34090.6 Da    PI: 7.3262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G255000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.31.8e-20251618128
                   NAM   8 hPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgy 82 
                           hP++eelv+ +L+++v + +       +++ ++i+++d+y + P++L        ++++++ wyfFs  + k++ g+rk r   t +g 
  Sobic.003G255000.1.p  25 HPSEEELVTSFLRPRVVSGHgdrdsrpCSA-SFIHDADVYAAGPRELTGghapaVASNGDSAWYFFSAVRAKTRDGQRKARtvDTGEGC 112
                           9**************988886777653333.57**************74466755566888********************5447799* PP

                   NAM  83 Wkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           W++    k+vl+    ++ lvg ++ + f ++ + + +++ W+m e +l
  Sobic.003G255000.1.p 113 WHSEAGAKPVLEGdghGRVLVGHRQGFSFVTKVDGRRVRSGWLMVELSL 161
                           ***********986656666**********99999999******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.48918177IPR003441NAC domain
PfamPF023654.4E-1225160IPR003441NAC domain
SuperFamilySSF1019413.92E-3125177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVATRSKTAP GPQPPSRPRA DLAAHPSEEE LVTSFLRPRV VSGHGDRDSR PCSASFIHDA  60
DVYAAGPREL TGGHAPAVAS NGDSAWYFFS AVRAKTRDGQ RKARTVDTGE GCWHSEAGAK  120
PVLEGDGHGR VLVGHRQGFS FVTKVDGRRV RSGWLMVELS LDGADADDVV LCKIYFSPRA  180
RASASASASA SAASAGRKRK AAAAADDKNP ANSARQRRRG PGTPTPNADE KDSTQSRGLA  240
DEDSPATDDP GALWTDDSFF SWWMRNKDRF MEEYSIVDRT DEEIQKTYGL DEYLRLLKHH  300
YTDFGCGHSP VLNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G255000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657827.11e-122uncharacterized protein LOC103637404
TrEMBLC5XGN10.0C5XGN1_SORBI; Uncharacterized protein
STRINGSb03g031000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Representative plantOGRP1601833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.19e-16NAC domain containing protein 2