PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G254850.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 25038.7 Da PI: 6.9638 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 46.3 | 1.4e-14 | 24 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr...atksgyWkat 86 pp f hP+ el++ yL+++v + + ++ ++i+e+d+y ++P++L + + +k+ ++ +t+++ +r + ++g W Sobic.003G254850.1.p 24 PPTFDSHPSYVELMNSYLRPRVVSGT-KV-DFIHETDLYGADPNQLTgNLL-------PATAKSGEEGSTKTQMKRdvdTGRKGGWPGV 103 678899***************99888.45.68**************83222.......223445555556666666211345899**** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ ++vls +g+ +g ++ ++f+++ + +k+ W m e rl Sobic.003G254850.1.p 104 GSPNDVLS-NGQRIGQRRYFAFHEKAGGDLVKSAWRMRELRL 144 ********.999************9999***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-20 | 23 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.665 | 23 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-5 | 24 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAGSPPKPPP PIFAAGSSSP KPPPPTFDSH PSYVELMNSY LRPRVVSGTK VDFIHETDLY 60 GADPNQLTGN LLPATAKSGE EGSTKTQMKR DVDTGRKGGW PGVGSPNDVL SNGQRIGQRR 120 YFAFHEKAGG DLVKSAWRMR ELRLDTNEGG QEEGSSDLLA LCKVYHFPNA EAGNESSMAV 180 AKADAEAPAA SAVTTAAGPG RKRKAGDTDS GTETVASSPA RQKKADGEGA DAATTGEKQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G254850.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1W0VYW1 | 1e-174 | A0A1W0VYW1_SORBI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22321 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 5e-10 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G254850.1.p |