PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G248400.1.p
Common NameSb03g030480, SORBIDRAFT_03g030480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 411aa    MW: 42366.2 Da    PI: 7.7993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G248400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.42.9e-33209266259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Sobic.003G248400.1.p 209 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 266
                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-35193268IPR003657WRKY domain
SuperFamilySSF1182901.2E-29200268IPR003657WRKY domain
PROSITE profilePS5081132.535203268IPR003657WRKY domain
SMARTSM007742.6E-39208267IPR003657WRKY domain
PfamPF031062.1E-26209266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSSGDFHFHD ELASLFAQRP AAPGEMMMAQ QQQQQQQAPA SWFADYLHGA GVPGMGGMDY  60
DLLCRALDLP LPGDDVVKRE LLVVDTGGGG GGLGFAAPTP SGGGTAPVTP NTTSSMSSSS  120
SEAAGGGAAG GGGGGSFGGA GEEDSPHQGR CKKEEGDGEE SKALDKGEED ADKGKKGSPA  180
AAKGKGKGEK RQRQPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTTQKCP  240
VKKRVERSYQ DPAVVITTYE GKHTHPIPAT LRGSTHLLAA QLHGGHHHHH HLGGAFPPPA  300
PLPQQMAGAP FGRAGGGGGG VIDMLGLLPP RNNNHAAMPP AIGLASSRGM SGGGPMSTVA  360
GATAATAAAT TTSSSSPPSL QMQHFMAQDF GLLQDMLPSF VHGNGGNVQP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-28199269878Probable WRKY transcription factor 4
2lex_A9e-28199269878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.104940.0embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G248400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681160.0BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275430.0KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458273.10.0probable WRKY transcription factor 48
TrEMBLC5XFY70.0C5XFY7_SORBI; Uncharacterized protein
STRINGSb03g030480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-49WRKY DNA-binding protein 71