PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G246900.1.p | ||||||||
Common Name | Sb03g030330, SORBIDRAFT_03g030330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9801.8 Da PI: 6.5176 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.6e-10 | 16 | 60 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E +l+ +a + +G g +W+++ar mg +t+ +++ ++ Sobic.003G246900.1.p 16 NWSKKENKLFEEALACYGEGtpdRWHKVARAMGGIKTADEVRRHY 60 8********************************778********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.7E-6 | 13 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.21E-12 | 15 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.47 | 15 | 64 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.6E-7 | 16 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.52E-7 | 16 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-5 | 16 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSGSRNSSRN VNIDSNWSKK ENKLFEEALA CYGEGTPDRW HKVARAMGGI KTADEVRRHY 60 EILNDDVTLI ESGGVPFPNY NTQGAWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-25 | 1 | 84 | 1 | 77 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G246900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728196 | 1e-103 | KJ728196.1 Zea mays clone pUT6470 MYB-related transcription factor (MYBR89) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458271.1 | 2e-60 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 4e-26 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | C5XFX6 | 6e-59 | C5XFX6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g030330.1 | 9e-60 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-26 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G246900.1.p |
Entrez Gene | 8061817 |