PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G246800.1.p | ||||||||
Common Name | Sb03g030310, SORBIDRAFT_03g030310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 245aa MW: 24611.5 Da PI: 7.5238 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.4 | 2.6e-20 | 118 | 152 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Sobic.003G246800.1.p 118 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 152 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.7E-20 | 112 | 172 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.325 | 112 | 148 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.94E-14 | 115 | 153 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-17 | 116 | 152 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.11E-13 | 117 | 149 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 118 | 143 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.5E-18 | 118 | 152 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSLLFAAAAA GDHYYKHCGG GGGGDGEAFS AGGPYGASVD 60 CTLSLGTPST RRAEAGAARA PAAAAAGLHW EAPSAPSCNG RQQQQQETRG AEAGARRCAN 120 CDTTSTPLWR NGPRGPKSLC NACGIRYKKE ERRAAAAAVA PAAAAALAAD GGVDYASYGY 180 ARQPQQWGCY GPAAVAKAAS FGMFGDAAAA EVVDGPCLPW GLGVMPSSPA FGTVREMPSL 240 FQYY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G246800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458269.2 | 1e-173 | GATA transcription factor 15 | ||||
TrEMBL | A0A1B6Q548 | 1e-172 | A0A1B6Q548_SORBI; Uncharacterized protein | ||||
STRING | Sb03g030310.1 | 1e-169 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 8e-26 | GATA transcription factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G246800.1.p |
Entrez Gene | 8060138 |