PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G244100.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 367aa    MW: 38998.5 Da    PI: 9.2685
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G244100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.94e-22222284163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L++e+++l++ ++kl++e+
  Sobic.003G244100.3.p 222 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRNEISKLTDSSQKLRMEN 284
                           689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.2E-27193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.8E-17220281No hitNo description
SMARTSM003381.8E-20222286IPR004827Basic-leucine zipper domain
PfamPF001701.5E-20223284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472224287IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-11226281No hitNo description
CDDcd147022.55E-21227274No hitNo description
PROSITE patternPS000360229244IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGHDEAVVTQ NSVKAPSPPK DQPAIYPCLD WSTMQAYYGQ GVLPPAFFNP GIAPGHVPPP  60
YVWCPQNMPP AAFGKPYAAI YPHAGGFLHP FMPLMVNPLS AEPAKSANSK DNSLNKKLKE  120
IDGTAVSSGN SEKTSGDYSL EGSSDGNNPK VSGTPKKRSF DDRTTSETCG VSATNDKPGE  180
SGRLATLPNV HIPDATMKPS VSTGSDFKVS GATSTEWPAK DDKESKRERR KQSNRESARR  240
SRLRKQAETE ELARKVELLT AENTSLRNEI SKLTDSSQKL RMENAALMEK LAGGTSDQAQ  300
EASAGHQTTA TAPPPSARVV KNFLSMMDVE GPSRGGGSRR TEHGAPRLRQ LLSSGGPLAA  360
DAVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238244RRSRLRK
2238245RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.80390.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G244100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636850.0BT063685.1 Zea mays full-length cDNA clone ZM_BFc0095E05 mRNA, complete cds.
GenBankJX4699560.0JX469956.1 Zea mays subsp. mays clone UT3218 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310900.10.0G-box-binding factor 3-like
TrEMBLA0A1B6Q5360.0A0A1B6Q536_SORBI; Uncharacterized protein
STRINGSb03g030050.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.16e-41G-box binding factor 3