PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G243500.1.p | ||||||||
Common Name | Sb03g029990, SORBIDRAFT_03g029990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 34026.5 Da PI: 4.2794 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.4e-20 | 102 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa+ ++ a+ +l+g Sobic.003G243500.1.p 102 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDTAAIQLRG 152 69********.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-12 | 102 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.14E-29 | 102 | 159 | No hit | No description |
SMART | SM00380 | 2.6E-33 | 103 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.341 | 103 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 103 | 160 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 103 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSRARTVRIF WDDPDLTDSS GEEDGCGARR VGRMVRELPP MAAPAAAAAA APAAAAVPDQ 60 CNAGDGDRGR RVGVGVAGPV GVCSGARRRL GKGGGPGGAA STKFRGVRRR PWGKFAAEIR 120 DPWRGVRVWL GTFDTAEEAA RVYDTAAIQL RGPNATTNFS SAGSGAAGQL QDPATPGGYE 180 SGAESSPAVS SPTSVLRKVP SVSSLAEDSS KDFDSDVAAA PCEPAVTECR SLAVLEEEEL 240 GEFVPFEDAP VYATSGFWDF EPDAGFLYAE PSSPELSWNA AAAAGAEPAS SDDAPSWAAP 300 ASPMQENNDY FQDLRDLFPL NPLPAIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 90 | 166 | 1 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G243500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034110 | 1e-130 | BT034110.1 Zea mays full-length cDNA clone ZM_BFc0028O19 mRNA, complete cds. | |||
GenBank | BT034337 | 1e-130 | BT034337.1 Zea mays full-length cDNA clone ZM_BFc0009P04 mRNA, complete cds. | |||
GenBank | BT055241 | 1e-130 | BT055241.2 Zea mays full-length cDNA clone ZM_BFc0029G06 mRNA, complete cds. | |||
GenBank | EU957518 | 1e-130 | EU957518.1 Zea mays clone 1596096 ap2 domain protein mRNA, complete cds. | |||
GenBank | KJ727587 | 1e-130 | KJ727587.1 Zea mays clone pUT5447 AP2-EREBP transcription factor (EREB208) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458254.1 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | C5XFB4 | 0.0 | C5XFB4_SORBI; Uncharacterized protein | ||||
STRING | Sb03g029990.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 1e-26 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G243500.1.p |
Entrez Gene | 8058265 |