PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G242300.2.p
Common NameSb03g029900, SORBIDRAFT_03g029900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 486aa    MW: 50813.9 Da    PI: 7.618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G242300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05107127323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           Cp Cgk F+++     H+++H
  Sobic.003G242300.2.p 107 CPVCGKEFRSRKAVCGHMKVH 127
                           *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003558.8E-4105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951105132IPR007087Zinc finger, C2H2
PfamPF138949.7E-4106127No hitNo description
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576674.71E-7344409No hitNo description
PROSITE profilePS501578.933344371IPR007087Zinc finger, C2H2
SMARTSM003550.73344366IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-4344367IPR007087Zinc finger, C2H2
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
PfamPF139129.3E-7386410IPR007087Zinc finger, C2H2
SMARTSM003550.17387409IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871387414IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAGSSEDERR RRRHRRGPAD LRDAEAPEEG ELVPGCDDSD VNTDDYYNNH HYYSSSDTDE  60
TTSDCNYARS VVLPLSYAAA AAAANNNGNA ASSSPVVAAP APAVLACPVC GKEFRSRKAV  120
CGHMKVHQQG TSTSTIGRRH EQQGVGKHKE MKRNAAVAAG WGGTGRRGCS GCWSKPASPN  180
AAQSDQSMAI VVANPKAVLQ PMPLAFAMPV PMEPQPATPN PSSVPMASAT PNPSSVPIAS  240
TTTHVSDESS SAKTMHCDAL ETVVAGAANP PTEADDVHLA DAARAPPSPP SAGMHMHTAS  300
VHQQLIASPP PDAEEERVQH PAVHHPHPIA PPLAVAGRQN PNGYRCKQCG VWFAMHQGLG  360
GHMAGHKTRE LAAVPCRGDA AKPEKVHVCR ICAAEFPTGV QLGGHMRKHY TGAPIVPKKK  420
PRLAVQPLPP PAEQRALEPA PRPAVAGRFR LFGVDIEAGP QMPAAAQEEG SSATQAPSAS  480
TGGEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815RRRRRHRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G242300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0VYR40.0A0A1W0VYR4_SORBI; Uncharacterized protein
STRINGSb03g029900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Representative plantOGRP1012237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-12C2H2 family protein