PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G227300.1.p
Common NameSb03g028530, SORBIDRAFT_03g028530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 362aa    MW: 38878.9 Da    PI: 7.1294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G227300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32213270259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  Sobic.003G227300.1.p 213 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 270
                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-34197272IPR003657WRKY domain
SuperFamilySSF1182907.45E-29205272IPR003657WRKY domain
PROSITE profilePS5081131.066207272IPR003657WRKY domain
SMARTSM007741.6E-37212271IPR003657WRKY domain
PfamPF031062.1E-25213270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSSGGGGSSG GGGDHHGVYH QHGHGHLARA DAGAEYVFHS NDMESFFFNQ PAASAGVDGS  60
GSRTTGAADE LMPPYSSITD YLQGFLQDPS GLARHLDAPC LPAEDAPLKH ELSVDVSHDS  120
QGTSGAPGGE GAAMHTPNSS VSLSSSDREG EGGQQPRRCK KGRPKAEDAE GDEKEQEDGE  180
NSSKANKSKK KAEKRQRQPR VAFLTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT  240
PKCGVKKRVE RSYQDPSTVI TTYEGQHTHH SPASLRAGGA HLFMSNAHGG LPPHLMPSSF  300
GRPDLMSMMH PAMGANPSMF LPSMPPPHMS TPSPAPPLQQ HHFTDYALLQ DLFPSTMPNN  360
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-292052731078Probable WRKY transcription factor 4
2lex_A2e-292052731078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G227300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268120.0KJ726812.1 Zea mays clone pUT3168 WRKY transcription factor (WRKY28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455987.10.0probable WRKY transcription factor 71
TrEMBLC5XED40.0C5XED4_SORBI; Uncharacterized protein
STRINGSb03g028530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-47WRKY DNA-binding protein 71