PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G200700.1.p
Common NameSb03g026280, SORBIDRAFT_03g026280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 333aa    MW: 33945.4 Da    PI: 9.0358
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G200700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29149208159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kkv+r+a+d  v+++tY g Hnh+
  Sobic.003G200700.1.p 149 VNDGCQWRKYGQKVAKGNPCPRAYYRCTGApDCPVRKKVQRCAHDAAVLVTTYDGAHNHP 208
                           58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-30137208IPR003657WRKY domain
SuperFamilySSF1182901.44E-25143209IPR003657WRKY domain
PROSITE profilePS5081126.544144210IPR003657WRKY domain
SMARTSM007741.5E-34149209IPR003657WRKY domain
PfamPF031064.5E-25150208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELKTFVFKE LMRGAADKMK LGDEPAAGPF LSLSLGPANA IGASLRTRGG EAINASQAPP  60
HAASNADDGI GLALGLRCDS DGGGEPVLAA VVGSAAGTKR QRVAILSDDS GGNRGSNKAL  120
RLPALLAPPQ QQRPAGRVTF RARCSAATVN DGCQWRKYGQ KVAKGNPCPR AYYRCTGAPD  180
CPVRKKVQRC AHDAAVLVTT YDGAHNHPLS PYAAAMASAM LASSSSSSSS ATAASCDDDA  240
PRLAFPISVL PPAPQRYSCS RDVAIGAGPP PAAPAATSHG DLVPMANIMQ KAVGDPNFRA  300
AVMAAVASYV GEQCGGRNIS TTSSPCHLPA NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-221492111475WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G200700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458057.10.0probable WRKY transcription factor 47
TrEMBLC5XPF80.0C5XPF8_SORBI; Uncharacterized protein
STRINGSb03g026280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-39WRKY DNA-binding protein 9