PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G199400.1.p | ||||||||
Common Name | Sb03g026170, SORBIDRAFT_03g026170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 217aa MW: 23757 Da PI: 5.8053 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.4 | 4.7e-31 | 137 | 195 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+ Sobic.003G199400.1.p 137 LDDGYRWRKYGKKLVKNSPNPRNYYRCSSEGCRVKKRVERERDDARFVITTYDGVHNHP 195 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.3E-33 | 125 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.1E-27 | 130 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.064 | 132 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-36 | 137 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 138 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSSSYSSLLS PSRAHADDHR VLLGGDADDD DMAAVSSYLS LDDIVDDVVG GEWYRPLAEE 60 SSSAAAAELQ PEPLLFATLQ AEDGYCVSGS GGEQSSAALA NDNHDRIDLT QDGGSRRLLR 120 SEHGKIAFKT RSDVDVLDDG YRWRKYGKKL VKNSPNPRNY YRCSSEGCRV KKRVERERDD 180 ARFVITTYDG VHNHPAAAPP RSPAYRLGEP PHGHHV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 124 | 194 | 4 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 124 | 194 | 4 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.19080 | 2e-53 | shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G199400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108522 | 1e-84 | AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence. | |||
GenBank | AY341846 | 1e-84 | AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds. | |||
GenBank | CT831367 | 1e-84 | CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455850.1 | 1e-158 | probable WRKY transcription factor 51 | ||||
TrEMBL | C5XPE6 | 1e-156 | C5XPE6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g026170.1 | 1e-157 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G199400.1.p |
Entrez Gene | 8078649 |