PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G195600.1.p
Common NameSb03g025860, SORBIDRAFT_03g025860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 443aa    MW: 46934.3 Da    PI: 4.8136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G195600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12252297555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h + Er+RR+++N++f++Lr+llP++      K +K ++L  A  Y+k L+
  Sobic.003G195600.1.p 252 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLMNAASYLKTLE 297
                           7899*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-17244313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.37E-12245301No hitNo description
PROSITE profilePS5088815.18247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16252312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDEEVWCGLD LQLQAGDIVD GGLHTATDLH NGHDDDDPFW PALAECAATF LAGGDDDTAA  60
CFDLTAPASA SASASKAMDT SGFFADNDRG DQQHRLTTTT RQDELQQPVY SSSSLSSKRS  120
LSIDSGGSSS ATFFTLDDAV LPAAAIFSPP PPAQRLQDPF VGDDDEAIML AMMAVLSSAS  180
PSSSESSSPP HRAAAASAVQ PRLHLHGGGD DSASHVTVRS SSLAAAVVPE RTTSAAARQL  240
QPDTNSSSQV YHMMSERKRR EKLNDSFHTL RSLLPPCSKK DKTTVLMNAA SYLKTLEAQV  300
SELEEKNTKL ERYVPRDDGG VGTTAAHRRA KVHIARAASD QQQVSLTVMV MVECDIVDLV  360
LHVLERLRWM AGVSVLSVDA DTYSPQALLK ALASIKLHIM DADCWNEALF HEAMTKAVHD  420
ATSSSSSSPA SCAAVAPLVA AA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260ERKRRE
2256261RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G195600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455828.10.0putative transcription factor bHLH041
TrEMBLC5XNS90.0C5XNS9_SORBI; Uncharacterized protein
STRINGSb03g025860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Representative plantOGRP1200956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-24bHLH family protein