PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G194600.1.p | ||||||||
Common Name | Sb03g025790, SORBIDRAFT_03g025790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 482aa MW: 51621 Da PI: 8.5113 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.5e-06 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Sobic.003G194600.1.p 78 FVCEICGKGFQRDQNLQLHRRGH 100 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-7 | 77 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 78 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.614 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 121 | 151 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.49E-7 | 151 | 176 | No hit | No description |
SMART | SM00355 | 160 | 156 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MFHHQQEFLQ AEAAAAADRE SSMSNLTSSA NAAPAAAAVP PPPAAGNNKR KRSLPGNPDP 60 EAEVVALSPA TLMATNRFVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG TGKEAQRKKV 120 YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVHSD WKAHSKICGT 180 REYKCDCGTI FSRRDSFITH RAFCDALTEE SAKAIGLNAM AAAPAPAHLH HHPLLFSPPP 240 AAHVMQQQQQ VDVALLQDHH HHHQHQEVMQ PPPQQHCNYA MKTEMPPWPP AMAYDHSLML 300 PAAQSSATSA PPPPQPQLPA ASAHLSATAL LQKAAQMGAT IGGAGTGYTQ MAGAATSAPG 360 TASSFGLGLP GLQNAHHHQQ QDGAGVMSAG LARTASSHGR SGEEGGADGM TRDFLGLRAF 420 SHRDILGLAG LDSSCMGAIT ANASMSCYEP QQQHAQPQAH QAQQQQQQSS NEPWHGMGSH 480 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-34 | 152 | 218 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 7e-34 | 152 | 218 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G194600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956926 | 0.0 | EU956926.1 Zea mays clone 1577561 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455824.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 1e-118 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | C5XNS2 | 0.0 | C5XNS2_SORBI; Uncharacterized protein | ||||
STRING | Sb03g025790.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 9e-94 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G194600.1.p |
Entrez Gene | 8078623 |
Publications ? help Back to Top | |||
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