PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G194600.1.p

Common Name

Sb03g025790, SORBIDRAFT_03g025790

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

C2H2

Protein Properties

Length: 482aa MW: 51621 Da PI: 8.5113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G194600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Sobic.003G194600.1.p 78 FVCEICGKGFQRDQNLQLHRRGH 100 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.49E-7	77	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	78	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	78	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	121	151	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.49E-7	151	176	No hit	No description
SMART	SM00355	160	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MFHHQQEFLQ AEAAAAADRE SSMSNLTSSA NAAPAAAAVP PPPAAGNNKR KRSLPGNPDP 60 EAEVVALSPA TLMATNRFVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG TGKEAQRKKV 120 YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVHSD WKAHSKICGT 180 REYKCDCGTI FSRRDSFITH RAFCDALTEE SAKAIGLNAM AAAPAPAHLH HHPLLFSPPP 240 AAHVMQQQQQ VDVALLQDHH HHHQHQEVMQ PPPQQHCNYA MKTEMPPWPP AMAYDHSLML 300 PAAQSSATSA PPPPQPQLPA ASAHLSATAL LQKAAQMGAT IGGAGTGYTQ MAGAATSAPG 360 TASSFGLGLP GLQNAHHHQQ QDGAGVMSAG LARTASSHGR SGEEGGADGM TRDFLGLRAF 420 SHRDILGLAG LDSSCMGAIT ANASMSCYEP QQQHAQPQAH QAQQQQQQSS NEPWHGMGSH 480 S*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MFHHQQEFLQ AEAAAAADRE SSMSNLTSSA NAAPAAAAVP PPPAAGNNKR KRSLPGNPDP  60
EAEVVALSPA TLMATNRFVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRG TGKEAQRKKV  120
YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVHSD WKAHSKICGT  180
REYKCDCGTI FSRRDSFITH RAFCDALTEE SAKAIGLNAM AAAPAPAHLH HHPLLFSPPP  240
AAHVMQQQQQ VDVALLQDHH HHHQHQEVMQ PPPQQHCNYA MKTEMPPWPP AMAYDHSLML  300
PAAQSSATSA PPPPQPQLPA ASAHLSATAL LQKAAQMGAT IGGAGTGYTQ MAGAATSAPG  360
TASSFGLGLP GLQNAHHHQQ QDGAGVMSAG LARTASSHGR SGEEGGADGM TRDFLGLRAF  420
SHRDILGLAG LDSSCMGAIT ANASMSCYEP QQQHAQPQAH QAQQQQQQSS NEPWHGMGSH  480
S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-34	152	218	3	69	Zinc finger protein JACKDAW
5b3h_F	7e-34	152	218	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G194600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956926	0.0	EU956926.1 Zea mays clone 1577561 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455824.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-118	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	C5XNS2	0.0	C5XNS2_SORBI; Uncharacterized protein
STRING	Sb03g025790.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	9e-94	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Sobic.003G194600.1.p
Entrez Gene	8078623

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]