PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G194500.1.p

Common Name

Sb03g025780, SORBIDRAFT_03g025780

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

C3H

Protein Properties

Length: 690aa MW: 74290.9 Da PI: 5.025

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G194500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	487	508	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++ +G C +Gd+CkF+H+ Sobic.003G194500.1.p 487 ECHNYKNNGMCARGDKCKFSHV 508 6********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.23	428	455	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0028	429	454	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-5	430	453	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.4	457	483	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.535	457	484	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.028	485	509	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.7E-5	487	508	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.943	487	510	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-4	488	507	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MEDALAPPSV APTPSALAAA AVFTRRRSHL DSASFRTLSR LFSHCLHINQ SPCGIAPPEP 60 EPVAADPVGG DSDDSPERPN GADCDRLKDV EIEAADAGGL SLYGAVYQPA AANPTLDLGE 120 SEALKHEGAD AVLVVESTSG MTRAEVEESA ALVVESTSCK TSAEVEESAV VAGLVAVEDL 180 SLKSVESLLG TKVDESVEVA VGDDEGRLLL EAMMTDFTGL IDDVDAGVIS AQSCAVSAGD 240 LQNSKASEES KQLDGGIEEG EPLRNCDHEQ NGGGGFEEGE IEGEFQDFGS EESVDSEHGD 300 EDGEDEKLEG NSISRGSGPD KTCDHGTQFG NLHSTPEIGN DDLILNRDAI VRGDAQIPVT 360 RAQAVTYDDV VDWNENPLPD NEAPNPGKKR KRTQTEQRKA KKTKNKRINR ALQQIADGVR 420 RPKLTRVIKP KKPCYFYDHG KCQQGNNCKY SHDFTPSTKS KPCTHFACGS CLKGEGCPYD 480 HELSKYECHN YKNNGMCARG DKCKFSHVMR TTEGTPTQDA KTSDVSLAYE KTNLREHTRS 540 QKNTTVHNGA PSSSILRNLT GVSSKSQNVS NRIPKGVQFR PFGKGQSNLS SLHLDALSME 600 KQRNANGTQH NLGGHEAERQ KIVKQNYQKP NLLLEDKNSS KEATRHPCSD LKKTTLPVDS 660 IATPGSIHTQ HEVSEASRIL QEFLFGAGS*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MEDALAPPSV APTPSALAAA AVFTRRRSHL DSASFRTLSR LFSHCLHINQ SPCGIAPPEP  60
EPVAADPVGG DSDDSPERPN GADCDRLKDV EIEAADAGGL SLYGAVYQPA AANPTLDLGE  120
SEALKHEGAD AVLVVESTSG MTRAEVEESA ALVVESTSCK TSAEVEESAV VAGLVAVEDL  180
SLKSVESLLG TKVDESVEVA VGDDEGRLLL EAMMTDFTGL IDDVDAGVIS AQSCAVSAGD  240
LQNSKASEES KQLDGGIEEG EPLRNCDHEQ NGGGGFEEGE IEGEFQDFGS EESVDSEHGD  300
EDGEDEKLEG NSISRGSGPD KTCDHGTQFG NLHSTPEIGN DDLILNRDAI VRGDAQIPVT  360
RAQAVTYDDV VDWNENPLPD NEAPNPGKKR KRTQTEQRKA KKTKNKRINR ALQQIADGVR  420
RPKLTRVIKP KKPCYFYDHG KCQQGNNCKY SHDFTPSTKS KPCTHFACGS CLKGEGCPYD  480
HELSKYECHN YKNNGMCARG DKCKFSHVMR TTEGTPTQDA KTSDVSLAYE KTNLREHTRS  540
QKNTTVHNGA PSSSILRNLT GVSSKSQNVS NRIPKGVQFR PFGKGQSNLS SLHLDALSME  600
KQRNANGTQH NLGGHEAERQ KIVKQNYQKP NLLLEDKNSS KEATRHPCSD LKKTTLPVDS  660
IATPGSIHTQ HEVSEASRIL QEFLFGAGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	392	KKRKRT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.13538	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G194500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX469993	0.0	JX469993.1 Zea mays subsp. mays clone UT3353 C3H-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455823.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_021313074.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_021313075.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	1e-163	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	C5XNS1	0.0	C5XNS1_SORBI; Uncharacterized protein
STRING	Sb03g025780.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43
Representative plant	OGRP8161	12	12

Link Out ? help Back to Top
Phytozome	Sobic.003G194500.1.p
Entrez Gene	8078622

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]