PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G191800.1.p
Common NameSb03g025570, SORBIDRAFT_03g025570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 462aa    MW: 46709.2 Da    PI: 6.1805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G191800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.7e-06344386754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           er rrR  ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Sobic.003G191800.1.p 344 ERPRRRNVRISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 386
                           678999999*************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.198337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-7343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-9344391No hitNo description
SuperFamilySSF474596.28E-11345396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-9347395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDHNFSDMIL RESAWSGGVV GAGDGGAVLL PPVEVVGNVV EGGSGMTVLE RLVLDEALAA  60
AILELQGSIV HVQQQAPAAC CAGSKAVPAA GGGVVGEEAA VAFPSMAMAT PTPAYADVDA  120
DVLQRQQHHH RHHGAMGISM PPDYDLTPAT TPAVAVTAAA FTATAAVDSG GNNSLVVGRS  180
PPPVFSASCN ETTATAAAVT ATTSLSCEQG GGGGGAGGGK RQRRPNRKRK AAAERSPVAV  240
AAAAAQESTL CSLLASGTTT AGEGGIQIAF STSAAKRSAK PSSLSSSGSS SISFDGRNNP  300
AGNGGGVEDS MYEPDTEALA QVKEMIYRAA AMRPVSLGSE DAGERPRRRN VRISERLRVL  360
QKLVPGGAKM DTASMLDEAA NYLRFLKSQV RELQTLDRRN YGATANNAND ATAAMAAVGS  420
SSSLMSYNNG NGAMPFSFPA AGETLRGSVG GGLDRPADLV I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G191800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458018.10.0putative lysozyme-like protein
RefseqXP_021311497.10.0putative lysozyme-like protein
TrEMBLA0A1W0VY070.0A0A1W0VY07_SORBI; Uncharacterized protein
STRINGSb03g025570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP1289345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-30bHLH family protein