PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G164500.1.p | ||||||||
Common Name | Sb03g015050, SORBIDRAFT_03g015050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 25441.8 Da PI: 8.1179 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 23 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd l + v+++G+ +W++I++ ++ gR +k+c++rw ++l Sobic.003G164500.1.p 23 KSAWTKEEDAVLREQVRLHGPQNWAAISEALP-GRNPKSCRLRWCQHL 69 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.4e-14 | 78 | 120 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++Tt+Ede ++ ++++++ W+tIa ++ gRt++ +k+rw+++ Sobic.003G164500.1.p 78 PFTTQEDETIIVNYRKYPNK-WATIAGFLP-GRTDNAIKNRWHSV 120 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.319 | 18 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-29 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 22 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 23 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.85E-15 | 25 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 25 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-10 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.966 | 77 | 125 | IPR017930 | Myb domain |
CDD | cd00167 | 8.43E-10 | 78 | 121 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-17 | 84 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAVPDEAASG SGDGRPAPVA MKKSAWTKEE DAVLREQVRL HGPQNWAAIS EALPGRNPKS 60 CRLRWCQHLS PAVDTVRPFT TQEDETIIVN YRKYPNKWAT IAGFLPGRTD NAIKNRWHSV 120 LGKVYHHQQQ QQRAAEPGLH RLSDGTLVLF PLAPGDLKAF GRDMIVPLLR HSPPGVDLSG 180 QCLKLFPLVA GDLARGNSAG EAAAMDVDYS TDESLVELRL WPSTTNHEGG GR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-30 | 23 | 123 | 2 | 101 | MYB3 |
3zqc_D | 4e-30 | 23 | 123 | 2 | 101 | MYB3 |
3zqc_G | 4e-30 | 23 | 123 | 2 | 101 | MYB3 |
3zqc_J | 4e-30 | 23 | 123 | 2 | 101 | MYB3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G164500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457840.1 | 1e-173 | transcription factor MYB105 | ||||
TrEMBL | A0A1W0VXK1 | 1e-171 | A0A1W0VXK1_SORBI; Uncharacterized protein | ||||
STRING | Sb03g015050.1 | 1e-172 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-36 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G164500.1.p |
Entrez Gene | 8086368 |