PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G163401.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20177.4 Da PI: 11.2561 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.9 | 1e-07 | 48 | 89 | 12 | 56 |
AP2 12 rgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +g W+ eIr+p + r ++gkf eAa a++aa+ +++ge Sobic.003G163401.1.p 48 WGGWAMEIRVP-----HtrLRLWIGKFRHSLEAALAYDAAMFCFYGE 89 99********7.....335************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.55 | 29 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-8 | 42 | 90 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-4 | 48 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-13 | 48 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.48E-13 | 48 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAASGTLTST VALAEARQQQ RSGCPATGST TSIRRDRQKA LGWAGVLWGG WAMEIRVPHT 60 RLRLWIGKFR HSLEAALAYD AAMFCFYGEH LPRPRRFNFL GMWHPTIPKH LRIHLTIPTI 120 RAIAADHGRS CAAFLAPLLC RAAPRGLSTQ PLMAMVPGSG TDGPGTTADS HLQLTLLSAT 180 NDHTM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G163401.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311834.1 | 1e-120 | ethylene-responsive transcription factor RAP2-1-like | ||||
TrEMBL | A0A1W0VXJ4 | 1e-132 | A0A1W0VXJ4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g021016.1 | 4e-76 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 4e-09 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G163401.1.p |