PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G148600.1.p | ||||||||
Common Name | Sb03g012890, SORBIDRAFT_03g012890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24222.2 Da PI: 8.8607 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 59 | 109 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ Sobic.003G148600.1.p 59 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 109 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-38 | 59 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 59 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 59 | 117 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.42E-16 | 59 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 59 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 60 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 60 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MCGGAIIFDY IPAARRRLSS AADFWPGSDA DAEDSHASLT PAPERAPRAK KAKRGRKNQY 60 RGIRQRPWGK WAAEIRDPVK GVRVWLGTYP TAEAAARAYD RAARRIRGAK AKVNFPNDTS 120 SSVTAVPTTA AGAAAAQAPA VLPAPKVEAQ AQVSDEVKEL SEELMAYENY MNFLGIPYME 180 GGNAAAGATT AAAAATVAEE AQVPAAPAGL WSFEDYYYPP SLSLFTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 59 | 121 | 5 | 68 | ATERF1 |
3gcc_A | 2e-22 | 59 | 121 | 5 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.17028 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G148600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952280 | 0.0 | EU952280.1 Zea mays clone 1275260 ethylene-responsive factor-like protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455546.1 | 1e-162 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | C5XIU7 | 1e-161 | C5XIU7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g012890.1 | 1e-162 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G148600.1.p |
Entrez Gene | 8060355 |