PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G142300.1.p | ||||||||
Common Name | Sb03g012310, SORBIDRAFT_03g012310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 33694.2 Da PI: 6.5043 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed ll+ +v+ +G g+W+ ar g++Rt+k+c++rw++yl Sobic.003G142300.1.p 25 RGPWTVDEDALLAGYVAAHGEGRWNELARAAGLRRTGKSCRLRWLNYL 72 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E++l++d+++++G++ W++Ia++++ gRt++++k++w++ Sobic.003G142300.1.p 78 RGDFTPREQLLILDLHARWGNR-WSKIAAHLP-GRTDNEVKNYWRT 121 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.379 | 20 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-13 | 24 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 24 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-15 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-21 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.15E-9 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 22.205 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 80 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.00E-11 | 81 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MDALWKQGSS SLCDWPAAEA ELLRRGPWTV DEDALLAGYV AAHGEGRWNE LARAAGLRRT 60 GKSCRLRWLN YLRPGVRRGD FTPREQLLIL DLHARWGNRW SKIAAHLPGR TDNEVKNYWR 120 TRVQKHAKQL GCDVGSHRFH DAIRNLWMPR LIERIHADET SATAAAAAAA ADNVSRYYSS 180 TSPSHELSSS QPAAAYGNAV PVGNCARAPS PDASSSVTGS SWSREASPPS QLQSSSCSTM 240 AGCSTSTDQC HNNGCSSATS VVDMFDESWS ELLARANHDD TEFGFGLGET GDNWWSLEDI 300 WEQPLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-24 | 1 | 119 | 1 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.19975 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G142300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455504.1 | 0.0 | transcription factor JAMYB | ||||
TrEMBL | C5XI40 | 0.0 | C5XI40_SORBI; Uncharacterized protein | ||||
STRING | Sb03g012310.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP14224 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-74 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G142300.1.p |
Entrez Gene | 8060313 |