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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.003G140100.1.p |
| Common Name | Sb03g011940, SORBIDRAFT_03g011940 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
bHLH |
| Protein Properties |
Length: 380aa MW: 40735.9 Da PI: 6.8373 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.003G140100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 28.2 | 3.4e-09 | 180 | 222 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR+r+ +++ L l+P+ +K++ a++ A+eYI++L
Sobic.003G140100.1.p 180 KKEKQRRQRLTEKYTALMHLIPNV-----TKPDRATVISDAIEYIQEL 222
57*********************8.....8****************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MYHPQCELLM AHEAQDLDAA GQPHHLAVSG VAGSIPAELS FHLLHSLDAT AAVNNSVTPQ 60
STIDYFLGVG GADPHQPAAL QYEPLPPPGG HHQHTMNMLR DYCSNGGGGG HYPTAEPYLR 120
GTRTGALVFG ATDDDESAAA YMPGGPFVET SPPPRATGGR KRGRALGGGF HAGLANGVEK 180
KEKQRRQRLT EKYTALMHLI PNVTKPDRAT VISDAIEYIQ ELGRTVEELT LLVEKKRRRR 240
ELQGDVVDAA PTAVVVAAAA TGGEAESSEG EVAPPPPPPA AVQRQPIRST YIQRRSKDTS 300
VDVRIVEEDV NIKLTKRRRD GCLAAASRAL DDLRLDLVHL SGGKIGDCHI YMFNTKIHKG 360
SSVFASAVAS RLMEVVDEY*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 158 | 164 | GRKRGRA |
| 2 | 234 | 239 | KKRRRR |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In anthers, expressed from the meiosis stage to mitosis, with maximum levels at stages 7 and 8, when meiosis initiates, and when endothecium and the middle layer become condensed, respectively. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in anthers; strong expression in the middle layer and tapetum, and weak expression in the endothecium. {ECO:0000269|PubMed:24755456}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT064392 | 0.0 | BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds. |
| GenBank | BT064573 | 0.0 | BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds. |
| GenBank | BT068906 | 0.0 | BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds. |
