PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G138400.1.p

Common Name

Sb03g011800, SORBIDRAFT_03g011800

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

WRKY

Protein Properties

Length: 583aa MW: 60582.4 Da PI: 7.2672

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G138400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	4.9e-30	292	350	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a Cpv+k+v+r+aed++++++tYeg+Hnh+ Sobic.003G138400.1.p 292 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKTILVTTYEGHHNHP 350 7**************************9**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-32	276	352	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-27	284	352	IPR003657	WRKY domain
PROSITE profile	PS50811	28.759	286	352	IPR003657	WRKY domain
SMART	SM00774	2.0E-35	291	351	IPR003657	WRKY domain
Pfam	PF03106	1.9E-25	293	350	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
METRPERHRH DHVHEQQAQE GEEDDAAAAV MEHGAALSLQ RGATLFGRRR QHDEEADRRR 60 RGEIREVDFF SRDSGARGQD DGGGRGVPGG GRDDVNIGLD LLTTATAATT SAAGEEMMAV 120 KNQKIEASAV EVELRRVVEE NRRLRGMLEE LNRSYGALYQ QLLQVTQHRQ HPADLMINRS 180 SLAHTHLTTT AASHNTSSTR QLLEARASST AMAQPHAVAA GGDDEASDGA EEASPSLSNG 240 GNNNDDADGK RKTSPDRTAP PRENGGEQAS SELPGRKARV SVRARSEAPM ISDGCQWRKY 300 GQKMAKGNPC PRAYYRCTMA VACPVRKQVQ RCAEDKTILV TTYEGHHNHP LPPAATTMAN 360 TTSAAAAMLL SGPATSRDGA AAALLGHPAL FHHSSSIPYA STMATLSASA PFPTITLDLT 420 QAPGGVAGSG GGGLLPHGLG LHRPPGGIHP VTAVPAMPFP VPSPLASMFL PQRAPTGPPM 480 PTGLQVARQQ QSVMMETVTA AIAADPNFTT ALAAAISSVM AGGAAHQAQP TPRGSNIIGI 540 AAGDQANGSA GAAAIAGPTA AGAHAASAGS PRFATQSCTT ST*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

METRPERHRH DHVHEQQAQE GEEDDAAAAV MEHGAALSLQ RGATLFGRRR QHDEEADRRR  60
RGEIREVDFF SRDSGARGQD DGGGRGVPGG GRDDVNIGLD LLTTATAATT SAAGEEMMAV  120
KNQKIEASAV EVELRRVVEE NRRLRGMLEE LNRSYGALYQ QLLQVTQHRQ HPADLMINRS  180
SLAHTHLTTT AASHNTSSTR QLLEARASST AMAQPHAVAA GGDDEASDGA EEASPSLSNG  240
GNNNDDADGK RKTSPDRTAP PRENGGEQAS SELPGRKARV SVRARSEAPM ISDGCQWRKY  300
GQKMAKGNPC PRAYYRCTMA VACPVRKQVQ RCAEDKTILV TTYEGHHNHP LPPAATTMAN  360
TTSAAAAMLL SGPATSRDGA AAALLGHPAL FHHSSSIPYA STMATLSASA PFPTITLDLT  420
QAPGGVAGSG GGGLLPHGLG LHRPPGGIHP VTAVPAMPFP VPSPLASMFL PQRAPTGPPM  480
PTGLQVARQQ QSVMMETVTA AIAADPNFTT ALAAAISSVM AGGAAHQAQP TPRGSNIIGI  540
AAGDQANGSA GAAAIAGPTA AGAHAASAGS PRFATQSCTT ST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-21	278	354	1	76	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	60	RRQHDEEADRRRR
2	82	90	GGRGVPGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G138400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243275	9e-51	AK243275.1 Oryza sativa Japonica Group cDNA, clone: J100050A06, full insert sequence.
GenBank	AP002480	9e-51	AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBank	AP014957	9e-51	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	9e-51	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455489.1	0.0	probable WRKY transcription factor 47 isoform X1
TrEMBL	C5XI05	0.0	C5XI05_SORBI; Uncharacterized protein
STRING	Sb03g011800.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4358	32	60
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	4e-64	WRKY family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G138400.1.p
Entrez Gene	8078145