PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G136900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 605aa    MW: 64616.1 Da    PI: 6.3015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G136900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.6e-16356402455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Sobic.003G136900.1.p 356 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 402
                           5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.53E-17349406No hitNo description
SuperFamilySSF474591.83E-20350411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-20356410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSDSNEFAEL LWENGQAVVH GRRKQTQAAF PPFTCGAASS SRAQEKQPGT DPVALLKTGL  60
FGDFSSGLDA TRDNVDLDDT VPWINYPIVE EDTAAPALAE SYSPDFFSEL HAAAVAAAAT  120
NLSALPPPVQ HTGNNNNRST PVATTSRGPE PAKETHRIPI AGPATRPEPQ AEFAATRKPR  180
PEGGGEGLMN FSLFSRPAAM ARASLQRPPQ TGTDKASNVT TSTRVESTVL QSASGQRTAP  240
VFADQRTPWS QSKEVRFSCA AAPTTATAGN LQQEMPRDMT PQKKVETRKA SEVAVATSSV  300
CSGNGAGIGN DESWRQQKRK SQAECSASQD DDLDDDSGGM RRSGSRGTKR SRTAEVHNLS  360
ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT LQLQVQMMSM GSGLCIPPML  420
LPPTMQHLQI PPIAHFPHLG MGLGYGMGVL DMNSTAAVPF PPMPGAHFPC SMIPGTPPQG  480
LGMPGRNTMP MFGVPGQAIH PSASSIQPFP SLAGLPVRPN LAPQASAVMA NMVQEQQQGA  540
TQQQQSLNNE AQQGANTGDP QLQTTVQAEN QHFSVPYSAQ TESNQFLDGG GNRTDTTGRN  600
EAET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360365ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.123110.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G136900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9478040.0EU947804.1 Zea mays clone 360176 mRNA sequence.
GenBankKJ7279690.0KJ727969.1 Zea mays clone pUT6082 bHLH transcription factor (bHLH68) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312914.10.0transcription factor APG-like isoform X2
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A1B6Q3040.0A0A1B6Q304_SORBI; Uncharacterized protein
STRINGSi000700m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-41phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]