PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G117800.1.p
Common NameSb03g009930, SORBIDRAFT_03g009930
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 442aa    MW: 46961.4 Da    PI: 7.4292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G117800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.2e-103258127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          ++++ C +++rtG C +G+rC+++H++
  Sobic.003G117800.1.p 32 PGEADCGYYLRTGACGFGERCRYNHPR 58
                          57899********************96 PP
2zf-CCCH37.34.4e-1282107227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C ++++tGtCk+G++Ck++H++
  Sobic.003G117800.1.p  82 GQPVCEYYLKTGTCKFGSNCKYHHPK 107
                           7899********************96 PP
3zf-CCCH406.7e-13127152227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tG+Ck+G++CkF+H++
  Sobic.003G117800.1.p 127 GEKECSYYMKTGQCKFGSTCKFHHPE 152
                           7899********************96 PP
4zf-CCCH38.71.7e-12278304127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C++f+rtG Ck+G++Ck++H++
  Sobic.003G117800.1.p 278 PGQPECQYFMRTGDCKFGNTCKYNHPR 304
                           5789*********************96 PP
5zf-CCCH32.12e-10327350427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            +C ++a++G+C+yG  Ck+ H++
  Sobic.003G117800.1.p 327 QPCAYYAQNGYCRYGVACKYDHPM 350
                           69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-53158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6763159IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-83358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-43758IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-780107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.48380108IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-1082107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-783109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-685109IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812125153IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10127152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6128152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4131151IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403277305IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4283304IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6323350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892323351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6324352IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8327350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-5327348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLRLGLDGGG EEGEDGELGA GEEADARLPE RPGEADCGYY LRTGACGFGE RCRYNHPRDR  60
GGTEFGGGAK NGAAQDFPER QGQPVCEYYL KTGTCKFGSN CKYHHPKQDG SVQSVILNNN  120
GFPLRPGEKE CSYYMKTGQC KFGSTCKFHH PEFGGIPVTP GIYPPLQSAS VPSPHTYAPN  180
WQMGRSPAVP GSYIPGSYTP MMLSSGMVPL QGWSPYPASV TPVASGGAQQ TVQAGPLYGI  240
GHHGSSTAIA YGGTYLPYSS STGQSSNNHQ EHGFPERPGQ PECQYFMRTG DCKFGNTCKY  300
NHPRDWSAPK SNYMFSHLCL PLRPGAQPCA YYAQNGYCRY GVACKYDHPM GTLGYSSSAL  360
PLSDMSIAPY PIGFSVATLA PSSSSPEYIS TKDPSINQVA SPVAAPEPVG AILPKGVFPP  420
DTIMRTQTST SVGSSSPGGG R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.4160.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G117800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688300.0EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457593.10.0zinc finger CCCH domain-containing protein 6 isoform X3
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A1W0VWX60.0A0A1W0VWX6_SORBI; Uncharacterized protein
STRINGSb03g009930.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]