PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G105600.1.p
Common NameSb03g008860, SORBIDRAFT_03g008860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 401aa    MW: 43319.4 Da    PI: 6.0575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G105600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52221521129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhP+d e++++yL +kv+++++++  +i evd++k+ePwdLp ++k +ekewyfF ++d+ky+tg r+nratk+gyWkatgkd
  Sobic.003G105600.1.p  22 LPPGFRFHPSDIEIISDYLMNKVRNTNFTC-IAIGEVDVNKTEPWDLPDQAKWGEKEWYFFNQKDRKYPTGLRANRATKAGYWKATGKD 109
                           79**************************99.88***************99999************************************ PP

                   NAM  90 kevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                           kev+++++ +   vg+kktLvfykgrap+g kt+Wvmheyrle
  Sobic.003G105600.1.p 110 KEVYKTTEGVlmlVGMKKTLVFYKGRAPRGDKTNWVMHEYRLE 152
                           *****85544677****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5715193IPR003441NAC domain
PROSITE profilePS5100555.80422193IPR003441NAC domain
PfamPF023657.2E-2723151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAEHHQPQQQ EMNVVPTSGL DLPPGFRFHP SDIEIISDYL MNKVRNTNFT CIAIGEVDVN  60
KTEPWDLPDQ AKWGEKEWYF FNQKDRKYPT GLRANRATKA GYWKATGKDK EVYKTTEGVL  120
MLVGMKKTLV FYKGRAPRGD KTNWVMHEYR LEGSGRLLGP ASASSSIATA ATATKASTSA  180
PMDEWVVCRV FEKTTGIKKT TAPSYEVAMA STEIDQNQNN IQAIPIPMSL QLPLSVPMPM  240
QFPIIPDFAM DPVAPYYPNA STGIPTMMPS MTGISGTSGL QINNAQFSNP IIASPQMNFY  300
HQMGMGAVAG RIDMGAAVGQ MGMGAGAGQM GMGAAVAQMD MGAAGAGGFD VVAPESRPSS  360
MVSQKDDQAN AAEISSMMSV TDPGSATTTI EMDGIWKYKY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-521619911171NO APICAL MERISTEM PROTEIN
1ut4_B5e-521619911171NO APICAL MERISTEM PROTEIN
1ut7_A5e-521619911171NO APICAL MERISTEM PROTEIN
1ut7_B5e-521619911171NO APICAL MERISTEM PROTEIN
3swm_A5e-521619914174NAC domain-containing protein 19
3swm_B5e-521619914174NAC domain-containing protein 19
3swm_C5e-521619914174NAC domain-containing protein 19
3swm_D5e-521619914174NAC domain-containing protein 19
3swp_A5e-521619914174NAC domain-containing protein 19
3swp_B5e-521619914174NAC domain-containing protein 19
3swp_C5e-521619914174NAC domain-containing protein 19
3swp_D5e-521619914174NAC domain-containing protein 19
4dul_A5e-521619911171NAC domain-containing protein 19
4dul_B5e-521619911171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G105600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457531.10.0NAC domain-containing protein 100
TrEMBLC5XF210.0C5XF21_SORBI; Uncharacterized protein
STRINGSb03g008860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-72NAC domain containing protein 100